List of publications

Technology and performance behind hema.to has been described in a number of scientific publications.

Hematologist-level classification of mature B-cell neoplasm using deep learning on multiparameter flow cytometry data

Max Zhao, Nanditha Mallesh, Richard Schabath, PhD, Alexander Hoellein, MD, Claudia Haferlach, MD, Torsten Haferlach, MD, Franz Elsner, PhD, Hannes Lueling, PhD, Peter Krawitz, MD, Wolfgang Kern, MD

Abstract

The wealth of information captured by multiparameter flow cytometry (MFC) can be analyzed by recent methods of computer vision when represented as a single image file. We therefore transformed MFC raw data into a multicolor 2D image by a self-organizing map (SOM) and classified this representation using a convolutional neural network (CNN). By this means, we built an artificial intelligence that is not only able to distinguish diseased from healthy samples, but that can also differentiate seven subtypes of mature B-cell neoplasm (B-NHL). We trained our model with 18,274 cases including chronic lymphocytic leukemia (CLL) and its precursor monoclonal B-cell lymphocytosis (MBL), marginal zone lymphoma (MZL), mantle cell lymphoma (MCL), prolymphocytic leukemia (PL), follicular lymphoma (FL), hairy cell leukemia (HCL), lymphoplasmacytic lymphoma (LPL) and achieved a weighted F1 score of 0.94 on a separate test set of 2,348 cases. Furthermore, we estimated the trustworthiness of a classification and could classify 70% of all cases with a confidence of 0.95 and higher. Our performance analyses indicate that particularly for rare subtypes further improvement can be expected when even more samples are available for training.

An Artificial Neural Network Providing Highly Reliable Decision Support in a Routine Setting for Classification of B-Cell Neoplasms Based on Flow Cytometric Raw Data

Wolfgang Kern, MD, Franz Elsner, PhD, Max Zhao, Nanditha Mallesh, Richard Schabath, PhD, Claudia Haferlach, MD, Peter Krawitz, MD, Hannes Lueling, PhD, Torsten Haferlach, MD

Abstract

Flow cytometry is an essential method in routine diagnostics for hematologic malignancies and is highly relevant in mature B-cell neoplasms. While flow cytometric procedures of sample preparation and measurement are subject to strict quality control mechanisms, analysis and interpretation of data are still vastly relying on expert knowledge applied to individual patient samples. To lower the dependency on expert knowledge and thus the inter-observer variability, we developed an automated mechanisms based on artificial intelligence.

Knowledge Transfer between Artificial Neural Networks for Different Multicolor Flow Cytometry Protocols Improves Classification Performance for Rare B-Cell Neoplasm Subtypes

Nanditha Mallesh, Max Zhao, Franz Elsner, PhD, Hannes Lueling, PhD, Richard Schabath, PhD, Claudia Haferlach, MD, Torsten Haferlach, MD, Peter Krawitz, MD, Wolfgang Kern, MD

Abstract

In multicolor flow cytometry (MFC), upgrading to a device that supports more fluorochromes per measurement is a common process in diagnostic laboratories. Usually this involves a period of applying both protocols during a transition period, the old one validating the new one. However, only very few of the rare diagnoses will be assessed by both protocols. In view of machine learning algorithms, typically this is too few data to train a new model to high accuracy. We therefore developed a new approach to successfully apply existing models under new setups.